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SRX146825: Whole Genome Sequencing
1 ILLUMINA (Illumina HiSeq 2000) run: 6.9M spots, 1.5G bases, 985.1Mb downloads

UUID: 98bc70fa-e04b-485a-ba78-fe05ac01e5f4
Design: Illumina sequencing of Plasmodium falciparum via random selection
Submitted by: Broad Institute (BI)
Study: Plasmodium falciparum Multi-isolate project for SNP discovery
PRJNA51255 • SRP003502 • All experiments • All runs
show Abstracthide Abstract
We are sequencing 25 strains of Plasmodium falciparum. They will be indexed and pooled: 101 bp PE reads; 35X coverage for SNP discovery. We will be submitting traces and SNP calls.
Sample: Generic sample from Plasmodium falciparum
SAMN00991005 • SRS312015 • All experiments • All runs
Organism: Plasmodium falciparum
Library:
Name: Pond-81787
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
1  forward barcode
Group tagBasecalls
AGTTGCTT
110  reverse

Experiment attributes: (show all 9 attributes...) (hide...)
analysis_type: AssemblyWithReference
gssr_id: 110711.0
library_type: WholeGenomeShotgun
lsid: broadinstitute.org:bsp.prod.sample:22BC8
material_type: DNA:DNA Genomic
project: G14394
root_sample_id: SM-1V7KB
sample_id: SM-22BC8
work_request: 25945
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2011-09-01 00:58:56.0GAPipelineRTA1.12.4.1Sequencer Application 1.4.5
Runs: 1 run, 6.9M spots, 1.5G bases, 985.1Mb
Run# of Spots# of BasesSizePublished
SRR4948186,928,8441.5G985.1Mb2012-05-07

ID:
182679

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